Basic Information
Locus ID:
nbis-gene-10295
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00008.1 | 3445242 | 3446195 | - | nbis-gene-10295 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 34,960.60 Da | 57.71 | 82.49 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 252 | 296 | 1.0E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 252 | 302 | 3.79E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 222 | 301 | 4.3E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 253 | 295 | 7.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 253 | 296 | 12.164712 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039807082.1 | E3 ubiquitin-protein ligase Os06g0535400-like [Panicum virgatum] | 0 |
| Q5Z5F2 | E3 ubiquitin-protein ligase Os06g0535400 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0535400 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TBG9 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_42105 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.1888, BH06.1729, CH06.1931 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0541930, gene-QOZ80_6BG0495120 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0709350.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_034092, gene-QYE76_034093 |
| Poaceae | Oryza coarctata | 2 | Oco11G010400, Oco12G010510 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g34450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G155100 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0400154, Pt_Chr0400168, Pt_Chr0400169, Pt_Chr0400176 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr05G006150 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G570900 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC7AG048530, gene_TRIDC7BG032550 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G347800.1.cds1, TraesCS7B02G235400.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb383490_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10295, nbis-gene-19345 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30652, Zma_g32889 |