Basic Information
Locus ID:
nbis-gene-1014
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00001.1 | 4791797 | 4796495 | + | nbis-gene-1014 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 112,751.97 Da | 33.22 | 84.89 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 268 | 2.88972E-52 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 44 | 79 | 1.2E-4 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 424 | 559 | 1.2E-46 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 192 | 227 | 1.5E-5 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 299 | 422 | 1.3E-17 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 149 | 182 | 0.14 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 606 | 1009 | 2.4E-173 | IPR010714 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 283 | 7.06E-49 | IPR036322 |
| Gene3D | G3DSA:1.25.40.470 | - | 431 | 603 | 1.7E-60 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 109 | 270 | 9.8E-51 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 108 | 7.0E-38 | IPR015943 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 144 | 183 | 6.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 2.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 114 | 0.86 | IPR001680 |
| SMART | SM00320 | WD40_4 | 188 | 227 | 1.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 230 | 268 | 150.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 82 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 195 | 236 | 15.120162 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 151 | 192 | 11.109979 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 151 | 185 | 9.09833 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 195 | 227 | 11.971952 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 13.382416 | IPR001680 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_039782899.1 | coatomer subunit alpha-3 [Panicum virgatum] | 0 |
| Q0J3D9 | Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0127800 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0NB33 | Coatomer subunit alpha OS=Panicum virgatum OX=38727 GN=PVAP13_9KG035380 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology