Basic Information
Locus ID:
jg9990
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 12327862 | 12330797 | - | jg9990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 38,872.73 Da | 44.67 | 79.80 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 176 | 228 | 7.61381E-11 | - |
| Pfam | PF12906 | RING-variant domain | 176 | 227 | 1.4E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 173 | 230 | 4.59E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 164 | 238 | 2.3E-13 | IPR013083 |
| SMART | SM00744 | ringv_2 | 175 | 228 | 2.7E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 168 | 234 | 17.611229 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 155 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_011084971.1 | uncharacterized protein LOC105167095 [Sesamum indicum] | 0 |
| TrEMBL | A0A6I9TIH2 | uncharacterized protein LOC105167095 OS=Sesamum indicum OX=4182 GN=LOC105167095 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology