Basic Information
Locus ID:
jg9951
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 12002353 | 12003516 | - | jg9951 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 41,986.90 Da | 77.44 | 55.22 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 192 | 233 | 5.47305E-24 | - |
| Pfam | PF13639 | Ring finger domain | 191 | 233 | 9.4E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 3 | 35 | 3.2E-15 | IPR039525 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 265 | 369 | 7.8E-40 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 172 | 243 | 2.87E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 239 | 3.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 192 | 232 | 7.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 192 | 233 | 12.149959 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 260 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_011085033.2 | probable E3 ubiquitin-protein ligase RHC2A [Sesamum indicum] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9TIN1 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105167139 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology