Basic Information
Locus ID:
jg9944
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Eukaryotic translation initiation factor eIF2A
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 11926405 | 11929256 | - | jg9944 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 53,987.21 Da | 47.59 | 74.81 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 215 | 474 | 3.44496E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 349 | 389 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 439 | 474 | 1.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 309 | 344 | 3.3E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 180 | 475 | 3.11E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 147 | 476 | 7.2E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 221 | 261 | 0.33 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 344 | 2.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 177 | 218 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 264 | 301 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 435 | 474 | 3.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 389 | 1.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 392 | 432 | 260.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 229 | 270 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 353 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 354 | 398 | 8.804123 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 442 | 475 | 11.761044 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 442 | 475 | 14.217871 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 344 | 10.864685 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 461 | 475 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 376 | 390 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_011085027.1 | protein FIZZY-RELATED 3 [Sesamum indicum] | 0 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9GBG8 | Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits OS=Handroanthus impetiginosus OX=429701 GN=CDL12_24825 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology