Basic Information
Locus ID:
jg9770
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 9303205 | 9306279 | - | jg9770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 68,475.01 Da | 37.85 | 100.40 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 256 | 298 | 8.90118E-29 | - |
| Pfam | PF04564 | U-box domain | 252 | 322 | 1.3E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 379 | 418 | 1.2E-10 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 462 | 500 | 2.7E-5 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 349 | 616 | 4.07E-49 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 252 | 327 | 5.81E-31 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 252 | 325 | 7.7E-31 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 11 | 121 | 6.4E-9 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 340 | 618 | 8.3E-59 | IPR011989 |
| SMART | SM00185 | arm_5 | 502 | 542 | 21.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 379 | 419 | 3.9E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 461 | 501 | 0.7 | IPR000225 |
| SMART | SM00185 | arm_5 | 543 | 583 | 170.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 255 | 318 | 1.4E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 420 | 460 | 0.041 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 390 | 432 | 14.4024 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 513 | 550 | 9.9924 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 251 | 325 | 45.238674 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 431 | 473 | 9.4674 | IPR000225 |
| Coils | Coil | Coil | 127 | 147 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_011084290.1 | U-box domain-containing protein 14 [Sesamum indicum] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TG78 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105166588 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology