Basic Information
Locus ID:
jg966
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 1180442 | 1186054 | - | jg966 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 24,933.94 Da | 48.09 | 56.96 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 141 | 188 | 1.3E-9 | IPR019787 |
| Pfam | PF01426 | BAH domain | 23 | 136 | 2.3E-21 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 130 | 192 | 3.32E-18 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 2 | 135 | 7.1E-33 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 203 | 5.6E-19 | IPR013083 |
| SMART | SM00249 | PHD_3 | 141 | 188 | 2.4E-8 | IPR001965 |
| SMART | SM00439 | BAH_4 | 21 | 137 | 4.0E-43 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 139 | 190 | 8.9916 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 137 | 24.60783 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 142 | 187 | - | IPR019786 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_020552092.1 | chromatin remodeling protein SHL isoform X2 [Sesamum indicum] | 0 |
| Q9FEN9 | Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=1 | 0 | |
| TrEMBL | A0A8M8V0B3 | chromatin remodeling protein SHL isoform X2 OS=Sesamum indicum OX=4182 GN=LOC105169677 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology