Basic Information
Locus ID:
jg9596
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 4378229 | 4379849 | - | jg9596 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 43,365.14 Da | 57.00 | 74.47 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 314 | 354 | 8.6E-9 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 117 | 232 | 1.31E-12 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 310 | 359 | 1.03E-10 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 307 | 358 | 2.8E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 97 | 242 | 1.3E-18 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 312 | 354 | 11.239699 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 396 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_011086787.1 | F-box protein At1g67340-like [Sesamum indicum] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9H8Z2 | MYND-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_13376 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology