Basic Information
Locus ID:
jg958
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Src homology 3 domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 1081669 | 1085948 | + | jg958 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 42,969.90 Da | 43.92 | 72.69 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 306 | 354 | 1.5E-11 | IPR001452 |
| SUPERFAMILY | SSF50044 | SH3-domain | 272 | 356 | 7.74E-17 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 45 | 256 | 7.12E-23 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 289 | 365 | 2.3E-16 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 43 | 267 | 6.4E-12 | IPR027267 |
| SMART | SM00326 | SH3_2 | 302 | 357 | 1.6E-13 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 299 | 358 | 19.936203 | IPR001452 |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 304 | 324 | 4.4E-6 | - |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 324 | 340 | 4.4E-6 | - |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 340 | 353 | 4.4E-6 | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
| Coils | Coil | Coil | 191 | 211 | - | - |
| Coils | Coil | Coil | 147 | 174 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_011088479.1 | SH3 domain-containing protein 2 [Sesamum indicum] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9GQU2 | Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation OS=Handroanthus impetiginosus OX=429701 GN=CDL12_19782 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology