Basic Information
Locus ID:
jg9554
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
ABC transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 3971338 | 3977880 | + | jg9554 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 162,614.22 Da | 35.62 | 105.73 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 581 | 784 | 7.71728E-93 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 269 | 556 | 1.61441E-90 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 882 | 1172 | 4.19944E-73 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1195 | 1415 | 4.35715E-110 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 268 | 535 | 4.7E-20 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 884 | 1124 | 7.9E-24 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 606 | 736 | 9.6E-14 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1215 | 1362 | 1.9E-28 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 605 | 797 | 3.94E-47 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 262 | 556 | 9.29E-30 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1189 | 1423 | 1.84E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 884 | 1177 | 6.54E-42 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 848 | 1177 | 3.2E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1179 | 1433 | 5.9E-83 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 559 | 830 | 1.3E-64 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 258 | 558 | 2.1E-42 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1223 | 1406 | 2.0E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 610 | 784 | 4.4E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1197 | 1431 | 17.65386 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 268 | 548 | 32.21542 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 583 | 807 | 19.75469 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 884 | 1160 | 30.766554 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 709 | 723 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_020551253.1 | putative ABC transporter C family member 15 [Sesamum indicum] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TT06 | ABC-type xenobiotic transporter OS=Sesamum indicum OX=4182 GN=LOC105168369 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology