Basic Information
Locus ID:
jg948
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Ubiquitin fusion degradation protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 968651 | 973338 | + | jg948 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 35,805.92 Da | 50.40 | 62.62 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 13 | 184 | 3.4E-80 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 109 | 182 | 5.3E-34 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 7 | 107 | 3.7E-44 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 289 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_011088496.1 | ubiquitin fusion degradation protein 1 homolog isoform X1 [Sesamum indicum] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6I9TRY2 | ubiquitin fusion degradation protein 1 homolog isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105169706 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology