Basic Information
Locus ID:
jg9295
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 1675232 | 1676721 | + | jg9295 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 17,312.29 Da | 29.36 | 79.62 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 86 | 156 | 3.0937E-31 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 154 | 3.9E-29 | IPR020189 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 15 | 93 | 1.55E-26 | IPR008991 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 86 | 156 | 3.08E-25 | IPR012340 |
| Gene3D | G3DSA:2.30.30.30 | - | 1 | 85 | 1.7E-42 | IPR014722 |
| Gene3D | G3DSA:2.40.50.140 | - | 86 | 158 | 2.3E-34 | - |
| SMART | SM01376 | eIF_5a_2 | 85 | 154 | 3.8E-34 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 18 | 152 | 1.1E-39 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 1 | 157 | 2.4E-65 | IPR001884 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | - | IPR019769 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69410.1 | eukaryotic elongation factor 5A-3. Encodes eIF5A-2, a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950, eIF5A-2/At1g26630 and eIF5A-3/At1g69410. | 0 |
| RefSeq | XP_012478735.1 | eukaryotic translation initiation factor 5A-2 [Gossypium raimondii] | 0 |
| Q9AXJ4 | Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2G9GR40 | Eukaryotic translation initiation factor 5A OS=Handroanthus impetiginosus OX=429701 GN=CDL12_19671 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology