Basic Information
Locus ID:
jg889
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Leucine-rich repeat receptor protein kinase exs
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 537488 | 541426 | - | jg889 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 125,788.66 Da | 32.42 | 110.22 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 685 | 745 | 5.0E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 553 | 612 | 1.3E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 66 | 8.3E-11 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 833 | 891 | 2.2E-6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 170 | 192 | 0.085 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1004 | 1071 | 1.54E-11 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 54 | 361 | 7.14E-53 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 635 | 917 | 2.04E-63 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 366 | 618 | 5.89E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 84 | 363 | 1.3E-78 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 640 | 931 | 2.8E-79 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 23 | 83 | 2.7E-9 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 986 | 1070 | 9.3E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1071 | 1154 | 2.6E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 364 | 639 | 4.8E-80 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 756 | 785 | 130.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 168 | 194 | 230.0 | - |
| SMART | SM00369 | LRR_typ_2 | 684 | 708 | 11.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 575 | 598 | 170.0 | - |
| SMART | SM00369 | LRR_typ_2 | 120 | 144 | 93.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 289 | 313 | 69.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 684 | 699 | 390.0 | - |
| SMART | SM00369 | LRR_typ_2 | 599 | 623 | 80.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 551 | 575 | 26.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 732 | 755 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 241 | 265 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 192 | 216 | 22.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 756 | 780 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 168 | 191 | 29.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 289 | 318 | 530.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 854 | 869 | 320.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 708 | 731 | 460.0 | - |
| SMART | SM00369 | LRR_typ_2 | 854 | 878 | 9.3 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 241 | 270 | 370.0 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1023 | 1163 | 8.612566 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 170 | 193 | 7.041994 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1029 | 1052 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 684 | 697 | 4.2E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 220 | 233 | 4.2E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_011076203.1 | leucine-rich repeat receptor protein kinase EMS1 [Sesamum indicum] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9T2H0 | leucine-rich repeat receptor protein kinase EMS1 OS=Sesamum indicum OX=4182 GN=LOC105160501 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |