Basic Information
Locus ID:
jg8871
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 12555649 | 12558981 | + | jg8871 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 45,045.95 Da | 43.80 | 79.42 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 257 | 305 | 1.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 88 | 311 | 3.16E-26 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 84 | 392 | 1.7E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 265 | 306 | 0.0026 | IPR001680 |
| SMART | SM00320 | WD40_4 | 80 | 114 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 229 | 262 | 430.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_011079695.1 | autophagy-related protein 18a [Sesamum indicum] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9HKN0 | Putative WD40 repeat protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_09244 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology