Basic Information
Locus ID:
jg8857
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 12460281 | 12468746 | - | jg8857 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 47,914.88 Da | 44.01 | 64.29 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01814 | Ubl_MUBs_plant | 7 | 94 | 6.70168E-41 | - |
| Pfam | PF13639 | Ring finger domain | 291 | 334 | 4.7E-8 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 157 | 237 | 2.8E-20 | IPR008913 |
| Pfam | PF13881 | Ubiquitin-2 like Rad60 SUMO-like | 7 | 111 | 1.9E-32 | IPR039540 |
| Pfam | PF14599 | Zinc-ribbon | 340 | 396 | 1.2E-24 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 291 | 342 | 7.07E-12 | - |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 4 | 98 | 2.5E-22 | IPR029071 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 228 | 285 | 2.88E-20 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 154 | 227 | 1.57E-18 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 365 | 405 | 4.7E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 101 | 1.9E-36 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 279 | 364 | 1.8E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 292 | 334 | 6.8E-7 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 227 | 291 | 33.008991 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 150 | 225 | 24.259096 | IPR008913 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 8 | 76 | 9.852578 | IPR000626 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 292 | 334 | 11.825393 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 123 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_011079733.1 | E3 ubiquitin-protein ligase MIEL1 [Sesamum indicum] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9T8S8 | E3 ubiquitin-protein ligase MIEL1 OS=Sesamum indicum OX=4182 GN=LOC105163180 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology