Basic Information
Locus ID:
jg8855
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
TIR1
Description:
Transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 12438922 | 12441853 | + | jg8855 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 68,290.30 Da | 47.25 | 94.96 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 3 | 43 | 1.3E-21 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 62 | 108 | 6.1E-24 | IPR041101 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 42 | 1.44E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 66 | 527 | 3.34E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 42 | 572 | 1.1E-183 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 41 | 9.6E-22 | - |
| SMART | SM00367 | LRR_CC_2 | 476 | 500 | 99.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 5 | 46 | 2.6E-7 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 427 | 450 | 220.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 367 | 391 | 0.32 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 309 | 332 | 76.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 125 | 150 | 53.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_011079740.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Sesamum indicum] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9T6T6 | protein TRANSPORT INHIBITOR RESPONSE 1-like OS=Sesamum indicum OX=4182 GN=LOC105163185 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology