Basic Information
Locus ID:
jg8650
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 10943923 | 10951313 | + | jg8650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 164,602.56 Da | 40.64 | 106.14 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 332 | 575 | 6.44832E-82 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 921 | 1215 | 2.47801E-94 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 601 | 801 | 1.1676E-104 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1238 | 1458 | 1.72244E-124 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 923 | 1163 | 5.7E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1257 | 1405 | 9.5E-30 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 619 | 753 | 7.7E-18 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 333 | 538 | 4.3E-23 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 597 | 823 | 4.02E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1231 | 1470 | 3.02E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 331 | 585 | 1.7E-28 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 920 | 1226 | 6.67E-50 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1223 | 1475 | 6.3E-81 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 882 | 1221 | 3.7E-60 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 317 | 584 | 1.2E-39 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 596 | 830 | 7.0E-71 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1266 | 1451 | 4.9E-15 | IPR003593 |
| SMART | SM00382 | AAA_5 | 628 | 809 | 1.8E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 923 | 1193 | 36.541107 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 332 | 558 | 28.363184 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 601 | 824 | 22.275686 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1240 | 1474 | 17.340405 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 726 | 740 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 868 | 897 | - | - |
| Coils | Coil | Coil | 879 | 899 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.3 | - | 0 |
| RefSeq | XP_011083071.1 | ABC transporter C family member 5-like [Sesamum indicum] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8F0ZV81 | ABC-type xenobiotic transporter OS=Rehmannia glutinosa OX=99300 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology