Basic Information
Locus ID:
jg8611
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 10588110 | 10594829 | - | jg8611 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 84,880.01 Da | 51.48 | 70.30 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 498 | 776 | 1.2673E-55 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 741 | 776 | 0.053 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 534 | 568 | 2.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 659 | 693 | 0.01 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 2.8E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 501 | 526 | 0.028 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 498 | 776 | 1.2E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 449 | 626 | 6.4E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 627 | 776 | 1.1E-27 | IPR015943 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0024 | IPR006594 |
| SMART | SM00320 | WD40_4 | 572 | 612 | 0.027 | IPR001680 |
| SMART | SM00320 | WD40_4 | 615 | 652 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 488 | 526 | 0.0017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 737 | 776 | 0.0016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 696 | 735 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 529 | 568 | 2.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 655 | 693 | 8.9E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 744 | 776 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 744 | 776 | 11.998316 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 501 | 535 | 8.570195 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 662 | 702 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 536 | 568 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.330894 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 536 | 568 | 10.311051 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 396 | - | - |
| Coils | Coil | Coil | 349 | 369 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_011080189.1 | transcriptional corepressor LEUNIG_HOMOLOG [Sesamum indicum] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9T9S6 | transcriptional corepressor LEUNIG_HOMOLOG OS=Sesamum indicum OX=4182 GN=LOC105163519 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology