Basic Information
Locus ID:
jg860
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 341573 | 342997 | + | jg860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 30,648.86 Da | 60.47 | 94.40 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 60 | 8.76E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 123 | 253 | 9.42E-13 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 119 | 266 | 5.8E-17 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 48 | 4.2E-6 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_012836766.1 | PREDICTED: F-box/LRR-repeat protein At3g48880-like [Erythranthe guttata] | 0 |
| TrEMBL | A0A022RD81 | F-box domain-containing protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a011645mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg860, jg864 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g14640 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627785 |