halophFGD

Basic Information

Locus ID: jg8531

Species & Taxonomic ID: Avicennia marina & 1381980

Genome Assembly: GCA_013168755.1

Description: F-Box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr16	9711779	9712849	-	jg8531

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.05	40,075.60 Da	38.80	80.25	-0.46

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12937	F-box-like	17	51	1.4E-7	IPR001810
SUPERFAMILY	SSF81383	F-box domain	11	51	4.19E-9	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	15	57	2.5E-7	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G18380.1	F-box family protein.
RefSeq	XP_011080388.1	F-box protein At4g18380 [Sesamum indicum]
Swiss-Prot	O49508	F-box protein At4g18380 OS=Arabidopsis thaliana OX=3702 GN=At4g18380 PE=2 SV=1
TrEMBL	A0A6I9T848	F-box protein At4g18380 OS=Sesamum indicum OX=4182 GN=LOC105163655 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg35596, jg8531
Aizoaceae	Mesembryanthemum crystallinum	1	gene_9979
Amaranthaceae	Beta vulgaris	1	BVRB_4g073490
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg17847, Sbi_jg62472
Amaranthaceae	Salicornia europaea	1	Seu_jg1046
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00007188
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000008296, gene:ENSEOMG00000030339 ... gene:ENSEOMG00000040058
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.4AG0002060, CQ.Regalona.r1.4BG0002140
Asteraceae	Flaveria trinervia	1	Ftri6G15419
Plantaginaceae	Plantago ovata	1	Pov_00017226
Plumbaginaceae	Limonium bicolor	1	Lb3G15666
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.583, evm.TU.LG08.1756, evm.TU.LG11.867 ... evm.TU.LG22.693
Solanaceae	Lycium barbarum	1	gene-LOC132626410