Basic Information
Locus ID:
jg8320
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 4060670 | 4062323 | - | jg8320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.13 | 38,424.81 Da | 34.15 | 86.85 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02242 | cupin_11S_legumin_N | 3 | 171 | 3.77337E-70 | - |
| CDD | cd02243 | cupin_11S_legumin_C | 198 | 353 | 1.11148E-76 | - |
| Pfam | PF00190 | Cupin | 199 | 334 | 3.3E-22 | IPR006045 |
| Pfam | PF00190 | Cupin | 10 | 156 | 8.9E-30 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 16 | 346 | 4.03E-51 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 195 | 356 | 1.4E-50 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 4 | 194 | 1.2E-34 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 195 | 339 | 9.7E-19 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 3 | 157 | 3.3E-36 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 316 | 333 | 3.3E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 258 | 274 | 3.3E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 276 | 291 | 3.3E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 294 | 312 | 3.3E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 211 | 231 | 3.3E-15 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_011089417.1 | glutelin type-B 5 [Sesamum indicum] | 0 |
| Q8GZP6 | 11S globulin seed storage protein Ana o 2.0101 (Fragment) OS=Anacardium occidentale OX=171929 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9I2G3 | 11S globulin OS=Handroanthus impetiginosus OX=429701 GN=CDL12_03314 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology