Basic Information
Locus ID:
jg8243
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 2273301 | 2274404 | - | jg8243 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 24,177.59 Da | 41.60 | 89.04 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 139 | 219 | 6.9E-6 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_011090043.1 | lysM domain receptor-like kinase 4 [Sesamum indicum] | 0 |
| TrEMBL | A0A6I9U0U2 | lysM domain receptor-like kinase 4 OS=Sesamum indicum OX=4182 GN=LOC105170821 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg18800, jg18801, jg8243 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30058330, pistato.v30140100 |
| Apiaceae | Apium graveolens | 2 | Ag5G00714, Ag6G02262 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G010430 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103695735 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1584.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G17600, Ftri12G19165 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014588 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.389 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24355, nbisL1-mrna-24447 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13610 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19655 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.147 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18995 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11876 |
| Salicaceae | Populus euphratica | 4 | populus_peu28725, populus_peu28732, populus_peu28741 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599446, gene-LOC132600290 |
| Solanaceae | Solanum chilense | 1 | SOLCI003959800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004454 |