Basic Information
Locus ID:
jg8045
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 381956 | 382945 | + | jg8045 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.97 | 35,871.17 Da | 67.37 | 64.07 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 281 | 318 | 3.44698E-10 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 279 | 322 | 3.2E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 280 | 325 | 5.96E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 262 | 329 | 7.1E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 281 | 318 | 8.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 281 | 319 | 10.92546 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 63 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_051134616.1 | uncharacterized protein LOC127253863 [Andrographis paniculata] | 0 |
| TrEMBL | A0A830BX30 | RING-type domain-containing protein OS=Phtheirospermum japonicum OX=374723 GN=PHJA_001030100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology