Basic Information
Locus ID:
jg7967
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 14194828 | 14201303 | - | jg7967 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 64,405.90 Da | 28.18 | 104.73 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 436 | 532 | 7.043E-25 | - |
| CDD | cd00030 | C2 | 256 | 358 | 2.59297E-25 | - |
| Pfam | PF00168 | C2 domain | 434 | 530 | 1.8E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 64 | 240 | 9.8E-14 | IPR039010 |
| Pfam | PF00168 | C2 domain | 254 | 358 | 5.7E-24 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 252 | 383 | 1.4E-29 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 431 | 553 | 2.98E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 431 | 562 | 1.1E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 247 | 383 | 3.0E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 435 | 534 | 1.9E-20 | IPR000008 |
| SMART | SM00239 | C2_3c | 255 | 355 | 1.8E-22 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 237 | 356 | 20.704956 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 59 | 241 | 28.175919 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 415 | 534 | 21.280193 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 499 | 507 | 6.8E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 451 | 463 | 6.8E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 477 | 490 | 6.8E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_011091413.1 | synaptotagmin-5 isoform X1 [Sesamum indicum] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9TYQ4 | synaptotagmin-5 isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105171571 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology