Basic Information
Locus ID:
jg7856
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 13340826 | 13343522 | + | jg7856 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 33,943.68 Da | 58.83 | 59.76 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 184 | 227 | 5.5E-9 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 49 | 130 | 8.9E-19 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 232 | 290 | 4.1E-23 | IPR039512 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 46 | 120 | 9.42E-16 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 121 | 178 | 2.09E-18 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 183 | 231 | 4.29E-10 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 256 | 295 | 6.0E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 178 | 230 | 5.5E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 185 | 227 | 5.8E-8 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 120 | 184 | 32.97279 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 185 | 228 | 12.076194 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 42 | 118 | 24.172993 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_011088380.1 | E3 ubiquitin-protein ligase MIEL1-like isoform X2 [Sesamum indicum] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9TRP3 | E3 ubiquitin-protein ligase MIEL1-like isoform X2 OS=Sesamum indicum OX=4182 GN=LOC105169486 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology