Basic Information
Locus ID:
jg7792
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 12778230 | 12785092 | - | jg7792 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 83,332.24 Da | 51.08 | 75.16 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 173 | 477 | 2.00951E-151 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 174 | 476 | 2.0E-40 | IPR001394 |
| Pfam | PF01753 | MYND finger | 75 | 112 | 1.5E-10 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 173 | 478 | 1.31E-81 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 72 | 117 | 1.57E-11 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 63 | 118 | 2.1E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 167 | 484 | 2.8E-86 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 75 | 112 | 12.000204 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 174 | 479 | 47.928322 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 175 | 190 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 75 | 112 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 687 | 709 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 622 | 644 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 622 | 637 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_011082032.1 | ubiquitin carboxyl-terminal hydrolase 18 [Sesamum indicum] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9TBD5 | ubiquitin carboxyl-terminal hydrolase 18 OS=Sesamum indicum OX=4182 GN=LOC105164908 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology