Basic Information
Locus ID:
jg7679
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 11856793 | 11862735 | - | jg7679 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 109,674.36 Da | 46.80 | 75.90 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 667 | 694 | 0.17 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 750 | 788 | 0.0057 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 842 | 872 | 0.14 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 667 | 977 | 1.22E-46 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 234 | 474 | 4.47E-11 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 240 | 488 | 6.3E-16 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 639 | 980 | 1.9E-118 | IPR015943 |
| SMART | SM00320 | WD40_4 | 834 | 872 | 9.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 791 | 830 | 0.43 | IPR001680 |
| SMART | SM00320 | WD40_4 | 706 | 745 | 0.068 | IPR001680 |
| SMART | SM00320 | WD40_4 | 883 | 922 | 64.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 748 | 788 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 930 | 978 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 651 | 695 | 1.4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 841 | 874 | 10.021053 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 120 | 475 | 8.895247 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 755 | 797 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 712 | 754 | 9.40565 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 841 | 881 | 12.346452 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 859 | 873 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 732 | 746 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 732 | 746 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 775 | 789 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 859 | 873 | 1.9E-6 | IPR020472 |
| Coils | Coil | Coil | 507 | 534 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_011073618.1 | protein SPA1-RELATED 2 [Sesamum indicum] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9SSV7 | protein SPA1-RELATED 2 OS=Sesamum indicum OX=4182 GN=LOC105158532 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology