Basic Information
Locus ID:
jg7628
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
lysine-specific demethylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 10868920 | 10906064 | - | jg7628 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 211,000.83 Da | 45.56 | 87.58 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15543 | PHD_RSF1 | 250 | 294 | 8.93833E-20 | - |
| CDD | cd16100 | ARID | 103 | 191 | 5.68657E-17 | - |
| Pfam | PF02373 | JmjC domain, hydroxylase | 420 | 536 | 1.2E-40 | IPR003347 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 110 | 191 | 9.1E-9 | IPR001606 |
| Pfam | PF02928 | C5HC2 zinc finger | 629 | 679 | 1.8E-13 | IPR004198 |
| Pfam | PF00628 | PHD-finger | 1704 | 1746 | 1.8E-8 | IPR019787 |
| Pfam | PF00628 | PHD-finger | 249 | 296 | 4.5E-9 | IPR019787 |
| Pfam | PF08429 | PLU-1-like protein | 919 | 1198 | 3.8E-19 | IPR013637 |
| Pfam | PF08429 | PLU-1-like protein | 727 | 1033 | 2.9E-11 | IPR013637 |
| Pfam | PF02375 | jmjN domain | 35 | 68 | 3.9E-16 | IPR003349 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1699 | 1749 | 2.1E-14 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 244 | 298 | 4.87E-15 | IPR011011 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 383 | 570 | 5.49E-31 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1440 | 1494 | 8.42E-5 | IPR011011 |
| SUPERFAMILY | SSF46774 | ARID-like | 85 | 199 | 1.7E-21 | IPR036431 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 242 | 286 | 5.9E-6 | IPR013083 |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 28 | 175 | 2.9E-24 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 287 | 581 | 7.3E-101 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1689 | 1747 | 1.8E-16 | IPR013083 |
| SMART | SM00545 | JmjN_1 | 33 | 74 | 4.7E-20 | IPR003349 |
| SMART | SM00249 | PHD_3 | 249 | 295 | 5.3E-10 | IPR001965 |
| SMART | SM00558 | cupin_9 | 387 | 553 | 1.7E-60 | IPR003347 |
| SMART | SM00249 | PHD_3 | 1704 | 1746 | 6.8E-10 | IPR001965 |
| SMART | SM00501 | bright_3 | 102 | 196 | 2.3E-25 | IPR001606 |
| SMART | SM01014 | ARID_2 | 98 | 191 | 5.1E-8 | - |
| SMART | SM00249 | PHD_3 | 1449 | 1493 | 1.3 | IPR001965 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 101 | 195 | 16.57914 | IPR001606 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 26 | 7.0 | - |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 387 | 553 | 36.423637 | IPR003347 |
| ProSiteProfiles | PS51183 | JmjN domain profile. | 34 | 75 | 17.693758 | IPR003349 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 247 | 297 | 9.6947 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 250 | 294 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1705 | 1745 | - | IPR019786 |
| Coils | Coil | Coil | 1176 | 1196 | - | - |
| Coils | Coil | Coil | 824 | 844 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63490.4 | - | 0 |
| RefSeq | XP_020548755.1 | LOW QUALITY PROTEIN: lysine-specific demethylase 5B [Sesamum indicum] | 0 |
| F4I240 | Lysine-specific demethylase JMJ17 OS=Arabidopsis thaliana OX=3702 GN=JMJ17 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8M8UXL5 | LOW QUALITY PROTEIN: lysine-specific demethylase 5B OS=Sesamum indicum OX=4182 GN=LOC105157801 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg7628 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14746 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004642 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg23843, Sbi_jg7673 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12348 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001211 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51980, Sgl57283 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000008167, gene:ENSEOMG00000022133 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2BG0010030, CQ.Regalona.r1.5AG0007490 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30137140 |
| Apiaceae | Apium graveolens | 1 | Ag6G01764 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G007690 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705556 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.2188.V1.1, AsparagusV1_07.2189.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G25995 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G63490.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023217m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g01130.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g024190.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0366, Ceq03G0370 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0462 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1379 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00030419 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb2G10687, Lb2G10688, Lb2G10689, Lb2G10690, Lb2G10861 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.3076, BH06.2875, CH06.989 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0551750, gene-QOZ80_6BG0505330 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0752360.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_037051 |
| Poaceae | Oryza coarctata | 2 | Oco11G017830, Oco12G018160 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g51490.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G267700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0404194 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G022770 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G1015100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG078290 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G566000.1, TraesCS7B02G492100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb229050_P001 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.600, evm.TU.LG26.431 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g05360 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.185 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22424 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6279 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20315 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.382 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014317 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3525 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6682 |
| Salicaceae | Populus euphratica | 1 | populus_peu34394 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634893 |
| Solanaceae | Solanum chilense | 1 | SOLCI004164700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028578 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11321 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0230 |