Basic Information
Locus ID:
jg7584
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Agamous-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 10010359 | 10035402 | - | jg7584 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 24,129.67 Da | 43.59 | 93.33 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 72 | 2.71371E-41 | IPR033896 |
| Pfam | PF01486 | K-box region | 88 | 172 | 7.1E-21 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 9.5E-27 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 75 | 5.62E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 82 | 7.6E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 3.3E-41 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 88 | 178 | 13.685946 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.58077 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 5.8E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 5.8E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 5.8E-30 | IPR002100 |
| Coils | Coil | Coil | 122 | 171 | - | - |
| Coils | Coil | Coil | 88 | 108 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_011071972.1 | agamous-like MADS-box protein AGL19 [Sesamum indicum] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SWP3 | agamous-like MADS-box protein AGL19 OS=Sesamum indicum OX=4182 GN=LOC105157291 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology