Basic Information
Locus ID:
jg7583
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Agamous-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 9946784 | 9968496 | - | jg7583 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 26,185.20 Da | 41.69 | 97.86 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 22 | 81 | 2.9213E-38 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 29 | 76 | 1.4E-25 | IPR002100 |
| Pfam | PF01486 | K-box region | 113 | 191 | 1.2E-20 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 22 | 94 | 1.7E-30 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 32 | 101 | 8.1E-27 | IPR036879 |
| SMART | SM00432 | madsneu2 | 20 | 79 | 1.6E-39 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 107 | 197 | 13.418911 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 20 | 80 | 31.77702 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 22 | 76 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 22 | 42 | 1.4E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 42 | 57 | 1.4E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 57 | 78 | 1.4E-30 | IPR002100 |
| Coils | Coil | Coil | 141 | 193 | - | - |
| Coils | Coil | Coil | 107 | 127 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11880.1 | AGAMOUS-like 14. AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots. | 0 |
| RefSeq | XP_011071972.1 | agamous-like MADS-box protein AGL19 [Sesamum indicum] | 0 |
| Q38838 | Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana OX=3702 GN=AGL14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9SWP3 | agamous-like MADS-box protein AGL19 OS=Sesamum indicum OX=4182 GN=LOC105157291 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology