Basic Information
Locus ID:
jg7362
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Zn-finger in Ran binding protein and others
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 3471538 | 3474229 | - | jg7362 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 62,193.21 Da | 46.48 | 68.72 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 331 | 355 | 4.8E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 288 | 312 | 1.1E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 366 | 388 | 8.0E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 325 | 358 | 3.45E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 279 | 313 | 1.43E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 360 | 393 | 1.54E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 277 | 315 | 7.6E-15 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 322 | 360 | 1.4E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 361 | 393 | 1.7E-9 | - |
| SMART | SM00547 | zf_4 | 366 | 390 | 5.8E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 333 | 357 | 6.8E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 289 | 313 | 6.3E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 287 | 316 | 9.777556 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 331 | 360 | 9.675926 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 364 | 393 | 9.404914 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 368 | 387 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 291 | 310 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 335 | 354 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 82 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_051149022.1 | uncharacterized protein LOC127263826 isoform X2 [Andrographis paniculata] | 0 |
| TrEMBL | A0A8M8ULF8 | LOW QUALITY PROTEIN: uncharacterized protein LOC105156320 OS=Sesamum indicum OX=4182 GN=LOC105156320 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology