Basic Information
Locus ID:
jg7355
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 3393682 | 3395241 | + | jg7355 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.95 | 33,430.81 Da | 45.30 | 95.50 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 14 | 52 | 5.6E-7 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 68 | 149 | 6.87E-6 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 58 | 9.94E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 12 | 54 | 2.2E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 55 | 160 | 6.0E-6 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 14 | 54 | 9.126548 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01620.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_020547477.1 | F-box protein SKIP28-like isoform X1 [Sesamum indicum] | 0 |
| Q9ZU90 | F-box protein SKIP28 OS=Arabidopsis thaliana OX=3702 GN=SKIP28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9H7K1 | F-box domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_13880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology