Basic Information
Locus ID:
jg7330
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 3157041 | 3162238 | - | jg7330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 44,309.06 Da | 32.08 | 89.25 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 210 | 232 | 0.13 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 71 | 373 | 1.18E-32 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 43 | 381 | 2.9E-62 | IPR015943 |
| SMART | SM00320 | WD40_4 | 161 | 200 | 0.43 | IPR001680 |
| SMART | SM00320 | WD40_4 | 204 | 241 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 375 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 293 | 332 | 5.5 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_011070623.1 | SEC12-like protein 2 [Sesamum indicum] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A6I9SNE0 | SEC12-like protein 2 OS=Sesamum indicum OX=4182 GN=LOC105156245 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology