Basic Information
Locus ID:
jg7271
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 2620151 | 2632701 | - | jg7271 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 134,887.17 Da | 52.24 | 73.13 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 604 | 758 | 1.62669E-28 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1070 | 1113 | 3.91774E-16 | - |
| CDD | cd12108 | Hr-like | 40 | 167 | 6.28364E-31 | - |
| CDD | cd12108 | Hr-like | 288 | 389 | 9.52344E-12 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 602 | 698 | 2.2E-6 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1118 | 1175 | 1.8E-23 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 37 | 169 | 5.8E-13 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 942 | 1017 | 2.2E-17 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1070 | 1119 | 6.75E-8 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 937 | 998 | 7.85E-16 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1008 | 1063 | 6.02E-15 | IPR037275 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 596 | 818 | 1.3E-23 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 33 | 187 | 2.1E-32 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1141 | 1184 | 1.3E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 278 | 407 | 8.3E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1066 | 1115 | 3.4E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 1071 | 1112 | 2.9E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 935 | 1004 | 24.666658 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1007 | 1070 | 29.120953 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1071 | 1113 | 10.954966 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 270 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_011070778.1 | zinc finger protein BRUTUS isoform X1 [Sesamum indicum] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9G5S4 | Zn-finger protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26845 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology