Basic Information
Locus ID:
jg7201
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 1939934 | 1940416 | + | jg7201 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.24 | 17,672.65 Da | 23.98 | 93.88 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 86 | 147 | 3.8078E-17 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 85 | 146 | 5.2E-13 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 10 | 71 | 2.9E-12 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 2 | 147 | 3.04E-39 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 151 | 4.7E-43 | - |
| SMART | SM00054 | efh_1 | 86 | 114 | 0.0083 | IPR002048 |
| SMART | SM00054 | efh_1 | 11 | 39 | 0.0072 | IPR002048 |
| SMART | SM00054 | efh_1 | 47 | 75 | 0.77 | IPR002048 |
| SMART | SM00054 | efh_1 | 122 | 150 | 2.8E-7 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 118 | 153 | 13.453381 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 7 | 42 | 14.011288 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 43 | 78 | 10.356991 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 82 | 117 | 13.397589 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 95 | 107 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 20 | 32 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 56 | 68 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 131 | 143 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_011070864.1 | probable calcium-binding protein CML15 [Sesamum indicum] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9SMV1 | probable calcium-binding protein CML15 OS=Sesamum indicum OX=4182 GN=LOC105156440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology