Basic Information
Locus ID:
jg6960
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 168482 | 170288 | + | jg6960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 41,431.07 Da | 47.84 | 82.18 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 315 | 354 | 5.2E-8 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 50 | 105 | 3.79E-6 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 113 | 234 | 4.84E-13 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 308 | 359 | 2.44E-10 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 307 | 356 | 1.5E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 92 | 249 | 1.5E-18 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 312 | 354 | 11.153278 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_011071226.1 | F-box protein At1g67340 [Sesamum indicum] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SMN3 | F-box protein At1g67340 OS=Sesamum indicum OX=4182 GN=LOC105156706 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology