Basic Information
Locus ID:
jg6512
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr20 | 12345560 | 12347454 | + | jg6512 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.62 | 24,755.22 Da | 99.40 | 58.78 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 18 | 61 | 2.43771E-21 | - |
| Pfam | PF13639 | Ring finger domain | 18 | 61 | 5.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 13 | 65 | 2.03E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 68 | 1.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 19 | 60 | 1.8E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 19 | 61 | 12.474524 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 170 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_011074947.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 isoform X2 [Sesamum indicum] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9SZ89 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 isoform X2 OS=Sesamum indicum OX=4182 GN=LOC105159542 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology