Basic Information
Locus ID:
jg6359
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr20 | 11425629 | 11426909 | + | jg6359 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 37,845.24 Da | 34.58 | 111.04 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 186 | 245 | 2.7E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 24 | 67 | 1.4E-7 | IPR013210 |
| SUPERFAMILY | SSF52047 | RNI-like | 75 | 343 | 1.88E-45 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 250 | 347 | 5.6E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 145 | 249 | 6.0E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 23 | 144 | 1.1E-23 | IPR032675 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75820.1 | Leucine-rich receptor-like protein kinase family protein. Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain. | 0 |
| RefSeq | XP_051139900.1 | receptor protein kinase CLAVATA1-like [Andrographis paniculata] | 0 |
| Q9SYQ8 | Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana OX=3702 GN=CLV1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A022RFI7 | Protein kinase domain-containing protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a000850mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6359 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30049210 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1200.V1.1 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020657 |
| Poaceae | Echinochloa crus-galli | 2 | CH01.3016, CH06.1251 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G043200, gene-BS78_K002900 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G890400 |
| Poaceae | Triticum aestivum | 1 | TraesCSU02G171600.1.cds1 |