Basic Information
Locus ID:
jg6095
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr20 | 9033332 | 9033829 | + | jg6095 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 18,718.77 Da | 50.17 | 99.33 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 74 | 118 | 8.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 74 | 124 | 9.56E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 123 | 4.3E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 75 | 117 | 9.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 75 | 118 | 12.84335 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63840.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011099308.1 | E3 ubiquitin-protein ligase ATL15-like [Sesamum indicum] | 0 |
| Q9XF92 | Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9GEW8 | RING-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_23646 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11433, jg22607, jg6095 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00024334, Pov_00024335 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132628965, gene-LOC132628972, gene-LOC132628983 |
| Solanaceae | Solanum chilense | 2 | SOLCI000858300, SOLCI002333900 |