Basic Information
Locus ID:
jg5913
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr20 | 6164251 | 6197226 | + | jg5913 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 68,817.50 Da | 57.10 | 58.00 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 153 | 203 | 1.24295E-14 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 301 | 349 | 8.6E-10 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 222 | 284 | 9.3E-17 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 222 | 291 | 1.41E-14 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 577 | 604 | 3.61E-5 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 303 | 351 | 1.3E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 147 | 231 | 1.51E-18 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 280 | 535 | 1.5E-85 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 146 | 236 | 3.0E-18 | IPR013083 |
| Gene3D | G3DSA:4.10.1060.10 | - | 573 | 604 | 2.2E-6 | - |
| SMART | SM00647 | ibrneu5 | 222 | 284 | 2.5E-25 | IPR002867 |
| SMART | SM00547 | zf_4 | 579 | 603 | 7.9E-4 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 288 | 358 | 0.031 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 153 | 197 | 9.214112 | IPR001841 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 577 | 604 | 8.930641 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 149 | 362 | 53.010521 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 581 | 600 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| Coils | Coil | Coil | 363 | 390 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_011073921.1 | probable E3 ubiquitin-protein ligase ARI8 [Sesamum indicum] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9SWQ1 | RBR-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105158764 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology