Basic Information
Locus ID:
jg5773
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr20 | 1687425 | 1701155 | - | jg5773 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 155,523.78 Da | 42.33 | 100.19 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05273 | GME-like_SDR_e | 1052 | 1375 | 0.0 | IPR033890 |
| Pfam | PF04564 | U-box domain | 262 | 326 | 1.6E-11 | IPR003613 |
| Pfam | PF01370 | NAD dependent epimerase/dehydratase family | 1054 | 1293 | 1.9E-44 | IPR001509 |
| SUPERFAMILY | SSF57850 | RING/U-box | 251 | 327 | 2.74E-16 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 191 | 617 | 3.67E-13 | IPR016024 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1048 | 1365 | 2.29E-75 | IPR036291 |
| SUPERFAMILY | SSF48371 | ARM repeat | 512 | 965 | 3.46E-32 | IPR016024 |
| Gene3D | G3DSA:3.90.25.10 | - | 1126 | 1358 | 7.1E-113 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 527 | 642 | 5.7E-10 | IPR011989 |
| Gene3D | G3DSA:3.40.50.720 | - | 1056 | 1345 | 7.1E-113 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 260 | 332 | 3.8E-17 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 866 | 991 | 1.3E-7 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 6 | 122 | 1.3E-9 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 644 | 854 | 4.3E-25 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 343 | 526 | 1.2E-10 | IPR011989 |
| SMART | SM00185 | arm_5 | 797 | 838 | 87.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 669 | 709 | 270.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 533 | 572 | 32.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 871 | 911 | 76.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 573 | 615 | 12.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 754 | 795 | 12.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 261 | 324 | 1.2E-13 | IPR003613 |
| SMART | SM00185 | arm_5 | 450 | 491 | 480.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 405 | 444 | 5.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 711 | 753 | 180.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 257 | 331 | 16.870516 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 584 | 628 | 11.4274 | IPR000225 |
| Coils | Coil | Coil | 341 | 361 | - | - |
| Coils | Coil | Coil | 195 | 220 | - | - |
| Coils | Coil | Coil | 125 | 145 | - | - |
| Coils | Coil | Coil | 67 | 87 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G28840.1 | GDP-D-mannose 3',5'-epimerase. Encodes a protein with GDP-D-mannose 3',5'-epimerase activity. The enzyme is involved in ascorbate biosynthesis. It catalyzes the conversion of GDP-D-mannose to GDP-L-galactose. | 0 |
| RefSeq | XP_051129858.1 | U-box domain-containing protein 43-like [Andrographis paniculata] | 0 |
| A3C4S4 | GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GME-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9G042 | RING-type E3 ubiquitin transferase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_28858 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5773 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30235850 |
| Apiaceae | Apium graveolens | 1 | Ag5G02549 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G000790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711617 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA05963 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0368 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0379 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.379 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1544 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2607 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6116 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.999 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012874 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6400 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2184 |
| Salicaceae | Populus euphratica | 1 | populus_peu21467 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609553 |
| Solanaceae | Solanum chilense | 1 | SOLCI003509000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031387 |