Basic Information
Locus ID:
jg5630
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
UBC25
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr20 | 412773 | 414625 | - | jg5630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 42,270.51 Da | 41.95 | 76.43 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 51 | 200 | 1.0599E-35 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 51 | 169 | 1.5E-24 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 44 | 214 | 4.36E-39 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 5 | 291 | 1.6E-76 | IPR016135 |
| SMART | SM00212 | ubc_7 | 49 | 207 | 5.6E-23 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 46 | 207 | 33.508945 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 334 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33770.1 | phosphate 2. Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. | 0 |
| RefSeq | XP_012840323.1 | PREDICTED: putative ubiquitin-conjugating enzyme E2 39 isoform X2 [Erythranthe guttata] | 0 |
| Q9C918 | Putative ubiquitin-conjugating enzyme E2 38 OS=Arabidopsis thaliana OX=3702 GN=UBC38 PE=3 SV=2 | 0 | |
| TrEMBL | A0A2G9I0H8 | Ubiquitin-protein ligase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04012 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology