halophFGD

Basic Information

Locus ID: jg5349

Species & Taxonomic ID: Avicennia marina & 1381980

Genome Assembly: GCA_013168755.1

Description: Nuclear transport factor 2 (NTF2) domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	13129342	13133124	+	jg5349

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.53	63,047.51 Da	28.73	70.58	-0.58

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00780	NTF2	37	157	4.83099E-36	IPR018222
CDD	cd00590	RRM_SF	487	559	8.71695E-10	-
Pfam	PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	488	552	1.4E-6	IPR000504
Pfam	PF02136	Nuclear transport factor 2 (NTF2) domain	41	155	1.1E-26	IPR002075
SUPERFAMILY	SSF54928	RNA-binding domain, RBD	479	567	2.99E-10	IPR035979
SUPERFAMILY	SSF54427	NTF2-like	37	157	4.12E-31	IPR032710
Gene3D	G3DSA:3.10.450.50	-	31	161	3.3E-34	-
Gene3D	G3DSA:3.30.70.330	-	471	581	7.8E-11	IPR012677
SMART	SM00360	rrm1_1	486	559	1.2E-4	IPR000504
ProSiteProfiles	PS50177	Nuclear transport factor 2 domain profile.	41	157	28.337711	IPR018222
MobiDBLite	mobidb-lite	consensus disorder prediction	317	394	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	273	304	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	231	398	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	239	255	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G60980.1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain.
RefSeq	XP_011101762.1	ras GTPase-activating protein-binding protein 1 [Sesamum indicum]
Swiss-Prot	Q9FME2	Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1
TrEMBL	A0A2G9HS34	Nuclear transport factor 2 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_06977 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	10	jg11059, jg16798, jg19757, jg30568, jg35455, jg36101, jg5349 ... jg38125, jg5828, jg9256
Aizoaceae	Mesembryanthemum crystallinum	5	gene_18287, gene_18830, gene_19699, gene_5308, gene_5404
Amaranthaceae	Atriplex hortensis	5	Ah000710, Ah021001, Ah026396, Ah028337, Ah029178
Amaranthaceae	Beta vulgaris	2	BVRB_6g136420, BVRB_7g166680
Amaranthaceae	Salicornia bigelovii	18	Sbi_jg1133, Sbi_jg14046, Sbi_jg19435, Sbi_jg23992 ... Sbi_jg23993, Sbi_jg23994, Sbi_jg24072, Sbi_jg26595, Sbi_jg30986, Sbi_jg33965, Sbi_jg35454, Sbi_jg44000, Sbi_jg51919, Sbi_jg58290, Sbi_jg59992, Sbi_jg62937, Sbi_jg7819, Sbi_jg7915
Amaranthaceae	Salicornia europaea	10	Seu_jg12126, Seu_jg12212, Seu_jg12783, Seu_jg12784 ... Seu_jg15114, Seu_jg17935, Seu_jg23936, Seu_jg25896, Seu_jg3575, Seu_jg9953
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00004762, GOSA_00011876, GOSA_00021286, GOSA_00025364 ... GOSA_00027020
Amaranthaceae	Suaeda glauca	11	Sgl03255, Sgl08648, Sgl34863, Sgl40262, Sgl54836, Sgl60137 ... Sgl73892, Sgl74295, Sgl74317, Sgl77399, Sgl77860
Amaranthaceae	Chenopodium album	15	gene:ENSEOMG00000001698, gene:ENSEOMG00000001806 ... gene:ENSEOMG00000005013, gene:ENSEOMG00000005382, gene:ENSEOMG00000006405, gene:ENSEOMG00000014264, gene:ENSEOMG00000022441, gene:ENSEOMG00000025495, gene:ENSEOMG00000026790, gene:ENSEOMG00000030262, gene:ENSEOMG00000033789, gene:ENSEOMG00000034770, gene:ENSEOMG00000040909, gene:ENSEOMG00000041198, gene:ENSEOMG00000043237
Amaranthaceae	Chenopodium quinoa	10	CQ.Regalona.r1.3AG0017310, CQ.Regalona.r1.3BG0019060 ... CQ.Regalona.r1.5AG0019370, CQ.Regalona.r1.5BG0020630, CQ.Regalona.r1.6AG0017030, CQ.Regalona.r1.6BG0018140, CQ.Regalona.r1.7AG0009810, CQ.Regalona.r1.7AG0011590, CQ.Regalona.r1.7BG0012000, CQ.Regalona.r1.7BG0013740
Anacardiaceae	Pistacia vera	8	pistato.v30014160, pistato.v30015430, pistato.v30026070 ... pistato.v30026090, pistato.v30145120, pistato.v30193190, pistato.v30226880, pistato.v30239850
Apiaceae	Apium graveolens	17	Ag10G00791, Ag10G00854, Ag10G01844, Ag2G01167, Ag2G01276 ... Ag3G02146, Ag4G00958, Ag5G01707, Ag6G00940, Ag6G00941, Ag7G00044, Ag7G00645, Ag7G02119, Ag7G02389, Ag8G01449, Ag8G01920, Ag9G02892
Arecaceae	Cocos nucifera	9	COCNU_02G014850, COCNU_05G001730, COCNU_07G001400 ... COCNU_08G011550, COCNU_09G009350, COCNU_10G001030, COCNU_13G005560, COCNU_15G004430, scaffold003427G000050
Arecaceae	Phoenix dactylifera	14	gene-LOC103697761, gene-LOC103703890, gene-LOC103706925 ... gene-LOC103707105, gene-LOC103708263, gene-LOC103709394, gene-LOC103711033, gene-LOC103711857, gene-LOC103718213, gene-LOC103722087, gene-LOC113461301, gene-LOC120103688, gene-LOC120111877, gene-LOC120112253
Asparagaceae	Asparagus officinalis	8	AsparagusV1_01.769.V1.1, AsparagusV1_03.2013.V1.1 ... AsparagusV1_03.2593.V1.1, AsparagusV1_04.3497.V1.1, AsparagusV1_07.1192.V1.1, AsparagusV1_07.1993.V1.1, AsparagusV1_09.1188.V1.1, AsparagusV1_10.1049.V1.1
Asteraceae	Flaveria trinervia	11	Ftri11G02815, Ftri11G10328, Ftri11G13371, Ftri12G09317 ... Ftri12G21851, Ftri12G30745, Ftri15G20113, Ftri18G05645, Ftri18G29617, Ftri2G12816, Ftri5G27906
Brassicaceae	Arabidopsis thaliana	8	AT1G13730.1, AT1G69250.1, AT2G03640.3, AT3G25150.2 ... AT3G55540.1, AT5G43960.1, AT5G48650.1, AT5G60980.2
Brassicaceae	Eutrema salsugineum	7	Thhalv10002500m.g.v1.0, Thhalv10003207m.g.v1.0 ... Thhalv10004460m.g.v1.0, Thhalv10005515m.g.v1.0, Thhalv10005527m.g.v1.0, Thhalv10007774m.g.v1.0, Thhalv10018584m.g.v1.0
Brassicaceae	Schrenkiella parvula	8	Sp1g12190.v2.2, Sp2g08780.v2.2, Sp2g14480.v2.2 ... Sp2g19030.v2.2, Sp2g24290.v2.2, Sp3g22220.v2.2, Sp3g22740.v2.2, Sp5g24300.v2.2
Brassicaceae	Brassica nigra	12	BniB01g035460.2N, BniB02g061260.2N, BniB02g065990.2N ... BniB02g069700.2N, BniB02g076110.2N, BniB03g041600.2N, BniB03g046600.2N, BniB04g017370.2N, BniB05g066200.2N, BniB06g038630.2N, BniB07g041020.2N, BniB07g052860.2N
Casuarinaceae	Casuarina equisetifolia	7	Ceq01G1778, Ceq01G1949, Ceq06G1265, Ceq07G0418, Ceq07G1245 ... Ceq08G0440, Ceq08G1565
Casuarinaceae	Casuarina glauca	8	Cgl01G1936, Cgl01G1952, Cgl01G2113, Cgl06G1324, Cgl07G0427 ... Cgl07G1321, Cgl08G0393, Cgl08G1597
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno04g02870, gene.Cymno07g08520, gene.Cymno10g06890 ... gene.Cymno14g02960, gene.Cymno14g08950
Dunaliellaceae	Dunaliella salina	1	Dusal.0548s00007.v1.0
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate02g29650, gene.Thate02g39290, gene.Thate02g39310 ... gene.Thate03g07090, gene.Thate04g21860
Malvaceae	Hibiscus hamabo Siebold & Zucc.	7	nbisL1-mrna-11523, nbisL1-mrna-2199, nbisL1-mrna-2978 ... nbisL1-mrna-4325, nbisL1-mrna-7485, nbisL1-mrna-7486, nbisL1-mrna-9767
Nitrariaceae	Nitraria sibirica	7	evm.TU.LG02.2383, evm.TU.LG03.1610, evm.TU.LG03.399 ... evm.TU.LG03.866, evm.TU.LG04.1614, evm.TU.LG10.538, evm.TU.LG11.732
Plantaginaceae	Plantago ovata	6	Pov_00002324, Pov_00023668, Pov_00024573, Pov_00027237 ... Pov_00027243, Pov_00036498
Plumbaginaceae	Limonium bicolor	9	Lb1G01374, Lb1G02768, Lb3G20547, Lb4G23944, Lb4G25948 ... Lb5G29581, Lb6G32589, Lb7G34044, Lb7G34045
Poaceae	Echinochloa crus-galli	21	AH01.3283, AH03.3564, AH03.3627, AH04.1363, AH07.1844 ... AH09.702, BH01.3672, BH03.3773, BH03.3963, BH04.1367, BH05.3885, BH07.1833, BH09.721, CH01.3857, CH03.3995, CH03.4071, CH04.1546, CH04.1547, CH05.4101, CH07.1688, CH09.776
Poaceae	Eleusine coracana subsp. coracana	12	gene-QOZ80_1AG0047130, gene-QOZ80_1BG0096960 ... gene-QOZ80_2AG0131420, gene-QOZ80_2BG0186770, gene-QOZ80_3AG0229590, gene-QOZ80_3BG0275560, gene-QOZ80_4AG0321380, gene-QOZ80_4BG0357110, gene-QOZ80_5AG0381260, gene-QOZ80_5BG0428310, gene-QOZ80_7AG0575960, gene-QOZ80_7BG0607420
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0126910.1, HORVU.MOREX.r3.2HG0160800.1 ... HORVU.MOREX.r3.3HG0305860.1, HORVU.MOREX.r3.7HG0691650.1
Poaceae	Lolium multiflorum	6	gene-QYE76_030891, gene-QYE76_035510, gene-QYE76_039865 ... gene-QYE76_043510, gene-QYE76_057538, gene-QYE76_066303
Poaceae	Oryza coarctata	10	Oco03G010500, Oco04G010770, Oco05G016080, Oco06G016640 ... Oco07G003510, Oco08G003700, Oco13G012020, Oco14G012790, Oco15G015040, Oco16G014300
Poaceae	Oryza sativa	5	LOC_Os02g03890.1, LOC_Os02g29480.1, LOC_Os03g30550.1 ... LOC_Os04g30430.1, LOC_Os07g41180.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G321500, gene-BS78_02G335200 ... gene-BS78_04G138600, gene-BS78_06G057100
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0201737, Pt_Chr0303091, Pt_Chr0303109, Pt_Chr0306195 ... Pt_Chr0403325, Pt_Chr0405454, Pt_Chr0600585, Pt_Chr0602603
Poaceae	Sporobolus alterniflorus	18	Chr01G023920, Chr03G023670, Chr04G013510, Chr04G022030 ... Chr06G011450, Chr06G023750, Chr07G012910, Chr08G018160, Chr0G018680, Chr13G012300, Chr15G013180, Chr19G002710, Chr23G015380, Chr25G013090, Chr26G004460, Chr27G002230, Chr27G014570, Chr30G012750
Poaceae	Thinopyrum elongatum	6	Tel2E01G342300, Tel2E01G499200, Tel3E01G632500 ... Tel7E01G501700, Tel7E01G706400, Tel7E01G706600
Poaceae	Triticum dicoccoides	10	gene_TRIDC2AG022490, gene_TRIDC2AG040210 ... gene_TRIDC2BG025760, gene_TRIDC2BG043160, gene_TRIDC3AG056710, gene_TRIDC3BG063610, gene_TRIDC7AG037510, gene_TRIDC7AG058690, gene_TRIDC7BG028520, gene_TRIDC7BG051400
Poaceae	Triticum aestivum	15	TraesCS2A02G176100.1, TraesCS2A02G278000.1 ... TraesCS2B02G202200.1, TraesCS2B02G295400.1, TraesCS2D02G183500.1, TraesCS2D02G277000.1, TraesCS3A02G398600.1, TraesCS3B02G431000.2, TraesCS3D02G392700.1, TraesCS7A02G281900.1, TraesCS7A02G421800.1, TraesCS7B02G179500.1, TraesCS7B02G322100.1, TraesCS7D02G280400.2, TraesCS7D02G414000.1
Poaceae	Zea mays	7	Zm00001eb086160_P003, Zm00001eb181100_P001 ... Zm00001eb241370_P001, Zm00001eb326230_P002, Zm00001eb326920_P007, Zm00001eb393140_P001, Zm00001eb420600_P002
Poaceae	Zoysia japonica	9	nbis-gene-10797, nbis-gene-12178, nbis-gene-19004 ... nbis-gene-20954, nbis-gene-25667, nbis-gene-28124, nbis-gene-32885, nbis-gene-44970, nbis-gene-46369
Poaceae	Zoysia macrostachya	9	Zma_g1003, Zma_g11963, Zma_g13535, Zma_g16337, Zma_g19518 ... Zma_g24724, Zma_g25492, Zma_g5511, Zma_g9405
Portulacaceae	Portulaca oleracea	14	evm.TU.LG02.72, evm.TU.LG03.1538, evm.TU.LG03.191 ... evm.TU.LG03.934, evm.TU.LG12.1528, evm.TU.LG12.209, evm.TU.LG12.804, evm.TU.LG13.502, evm.TU.LG13.968, evm.TU.LG14.1855, evm.TU.LG18.243, evm.TU.LG21.196, evm.TU.LG21.631, evm.TU.LG26.826
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g06170, gene.Posoc02g16170, gene.Posoc06g01730 ... gene.Posoc06g19730
Rhizophoraceae	Bruguiera sexangula	11	evm.TU.60369.11, evm.TU.60370.11 ... evm.TU.Scaffold_15_RagTag.545, evm.TU.Scaffold_17_RagTag.419, evm.TU.Scaffold_3_RagTag.1706, evm.TU.Scaffold_5_RagTag.1140, evm.TU.Scaffold_5_RagTag.1754, evm.TU.Scaffold_6_RagTag.341, evm.TU.Scaffold_6_RagTag.914, evm.TU.Scaffold_9_RagTag.1052, evm.TU.Scaffold_9_RagTag.1537
Rhizophoraceae	Carallia pectinifolia	12	nbisL1-mrna-11612, nbisL1-mrna-12251, nbisL1-mrna-14205 ... nbisL1-mrna-15230, nbisL1-mrna-15767, nbisL1-mrna-2017, nbisL1-mrna-20710, nbisL1-mrna-20782, nbisL1-mrna-2158, nbisL1-mrna-22901, nbisL1-mrna-2612, nbisL1-mrna-26701
Rhizophoraceae	Ceriops tagal	11	nbisL1-mrna-11950, nbisL1-mrna-12329, nbisL1-mrna-20130 ... nbisL1-mrna-20136, nbisL1-mrna-20879, nbisL1-mrna-2787, nbisL1-mrna-4212, nbisL1-mrna-6131, nbisL1-mrna-9010, nbisL1-mrna-9235, nbisL1-mrna-9610
Rhizophoraceae	Ceriops zippeliana	7	nbisL1-mrna-10254, nbisL1-mrna-10774, nbisL1-mrna-14346 ... nbisL1-mrna-15822, nbisL1-mrna-21520, nbisL1-mrna-2899, nbisL1-mrna-783
Rhizophoraceae	Kandelia candel	9	evm.TU.utg000001l.273, evm.TU.utg000003l.431 ... evm.TU.utg000003l.969, evm.TU.utg000005l.237, evm.TU.utg000006l.1022, evm.TU.utg000006l.407, evm.TU.utg000011l.571, evm.TU.utg000013l.294, evm.TU.utg000019l.201
Rhizophoraceae	Kandelia obovata	9	Maker00001852, Maker00002661, Maker00006644, Maker00007441 ... Maker00009696, Maker00009756, Maker00010225, Maker00013806, Maker00013879
Rhizophoraceae	Rhizophora apiculata	9	nbisL1-mrna-10555, nbisL1-mrna-11392, nbisL1-mrna-11749 ... nbisL1-mrna-12177, nbisL1-mrna-13954, nbisL1-mrna-1417, nbisL1-mrna-15192, nbisL1-mrna-361, nbisL1-mrna-7205
Rhizophoraceae	Rhizophora mangle	10	nbisL1-mrna-14933, nbisL1-mrna-15690, nbisL1-mrna-17242 ... nbisL1-mrna-18215, nbisL1-mrna-18998, nbisL1-mrna-19847, nbisL1-mrna-23523, nbisL1-mrna-4309, nbisL1-mrna-4552, nbisL1-mrna-5003
Salicaceae	Populus euphratica	9	populus_peu06811, populus_peu20711, populus_peu21602 ... populus_peu21982, populus_peu25140, populus_peu26714, populus_peu28440, populus_peu30761, populus_peu30877
Solanaceae	Lycium barbarum	8	gene-LOC132605737, gene-LOC132607091, gene-LOC132607702 ... gene-LOC132608814, gene-LOC132610025, gene-LOC132621824, gene-LOC132622621, gene-LOC132642855
Solanaceae	Solanum chilense	9	SOLCI000392300, SOLCI000821600, SOLCI001797000 ... SOLCI004587300, SOLCI004653700, SOLCI004657500, SOLCI005088800, SOLCI005334900, SOLCI005573000
Solanaceae	Solanum pennellii	9	gene-LOC107001183, gene-LOC107009693, gene-LOC107010805 ... gene-LOC107020113, gene-LOC107021244, gene-LOC107023393, gene-LOC107023632, gene-LOC107031299, gene-LOC107031513
Tamaricaceae	Reaumuria soongarica	7	STRG.13302_chr07_-, STRG.2176_chr01_+, STRG.22751_chr05_- ... STRG.24231_chr10_+, STRG.39_chr01_-, gene_11627, gene_9448
Tamaricaceae	Tamarix chinensis	6	TC01G0557, TC01G0737, TC03G0456, TC03G0457, TC05G0677 ... TC12G1681
Zosteraceae	Zostera marina	4	Zosma01g38270.v3.1, Zosma02g22650.v3.1, Zosma03g16050.v3.1 ... Zosma05g14690.v3.1