Basic Information
Locus ID:
jg5278
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 12499363 | 12505628 | + | jg5278 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 40,695.20 Da | 50.65 | 74.24 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 143 | 192 | 1.5411E-30 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.25103E-29 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 332 | 374 | 2.71923E-24 | - |
| Pfam | PF09280 | XPC-binding domain | 255 | 310 | 4.0E-23 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 336 | 371 | 2.2E-10 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 2.1E-18 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 152 | 187 | 2.0E-13 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 146 | 197 | 2.55E-11 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 317 | 378 | 5.57E-15 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 81 | 9.07E-22 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 251 | 317 | 2.35E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 328 | 375 | 6.3E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 142 | 192 | 2.4E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.3E-26 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 244 | 311 | 7.5E-28 | IPR036353 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 3.7E-20 | IPR000626 |
| SMART | SM00165 | uba_6 | 336 | 373 | 4.7E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 149 | 189 | 3.6E-4 | IPR015940 |
| SMART | SM00727 | CBM | 253 | 296 | 3.5E-7 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 379 | 8.8E-114 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.455528 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 333 | 374 | 14.884313 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 147 | 190 | 12.281826 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 330 | 346 | 2.0E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 347 | 361 | 2.0E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 362 | 377 | 2.0E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 281 | 303 | 2.0E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 112 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_020547636.1 | ubiquitin receptor RAD23c-like [Sesamum indicum] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A8M8UUX7 | Ubiquitin receptor RAD23 OS=Sesamum indicum OX=4182 GN=LOC105156393 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology