Basic Information
Locus ID:
jg5250
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 12138331 | 12147703 | + | jg5250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 140,193.36 Da | 56.54 | 75.85 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 295 | 422 | 1.6091E-17 | - |
| CDD | cd12108 | Hr-like | 640 | 796 | 1.54546E-25 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1106 | 1149 | 2.35394E-15 | - |
| CDD | cd12108 | Hr-like | 41 | 168 | 2.61779E-28 | - |
| Pfam | PF13639 | Ring finger domain | 1106 | 1148 | 9.1E-7 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 38 | 170 | 1.6E-13 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 978 | 1053 | 5.9E-17 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 636 | 732 | 1.0E-5 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 294 | 424 | 1.7E-6 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1154 | 1186 | 7.1E-7 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1104 | 1161 | 7.71E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 970 | 1034 | 3.4E-8 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1044 | 1099 | 6.02E-15 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1100 | 1151 | 1.4E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 297 | 440 | 5.3E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 35 | 187 | 1.5E-32 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 633 | 861 | 2.6E-23 | - |
| SMART | SM00184 | ring_2 | 1107 | 1148 | 1.1E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1043 | 1106 | 29.577091 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1107 | 1149 | 10.984472 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 971 | 1040 | 24.741282 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_011070778.1 | zinc finger protein BRUTUS isoform X1 [Sesamum indicum] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9G5S4 | Zn-finger protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26845 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology