Basic Information
Locus ID:
jg5128
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 11037922 | 11041942 | + | jg5128 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 41,725.79 Da | 59.16 | 95.65 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 319 | 361 | 4.9E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 308 | 367 | 1.3E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 299 | 368 | 7.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 320 | 360 | 3.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 320 | 361 | 12.341748 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68070.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_011070565.1 | E3 ubiquitin protein ligase RIE1-like isoform X1 [Sesamum indicum] | 0 |
| Q8GUU2 | E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana OX=3702 GN=RIE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9STM4 | E3 ubiquitin protein ligase RIE1-like isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105156193 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology