Basic Information
Locus ID:
jg511
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ScioBoG_15014_HRSCAF_15085 | 1 | 1508 | - | jg511 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 55,866.86 Da | 41.15 | 92.21 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 180 | 311 | 4.63015E-59 | - |
| CDD | cd17920 | DEXHc_RecQ | 1 | 179 | 2.35687E-94 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 5 | 159 | 4.8E-19 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 195 | 301 | 1.1E-14 | IPR001650 |
| Pfam | PF09382 | RQC domain | 378 | 487 | 8.4E-32 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 314 | 376 | 1.9E-17 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2 | 315 | 6.41E-39 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 178 | 422 | 6.76E-61 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 312 | 496 | 9.3E-49 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 179 | 311 | 9.0E-40 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 178 | 5.6E-70 | IPR027417 |
| SMART | SM00956 | RQC_2 | 383 | 485 | 5.4E-40 | IPR018982 |
| SMART | SM00490 | helicmild6 | 221 | 302 | 2.3E-23 | IPR001650 |
| SMART | SM00487 | ultradead3 | 1 | 186 | 2.6E-24 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 1 | 435 | 2.1E-146 | IPR004589 |
| TIGRFAM | TIGR01389 | recQ: ATP-dependent DNA helicase RecQ | 1 | 493 | 2.1E-204 | IPR006293 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 9 | 172 | 23.25993 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 193 | 341 | 19.989708 | IPR001650 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_024391776.1 | uncharacterized protein LOC112290058 isoform X4 [Physcomitrium patens] | 0 |
| P15043 | ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12) OX=83333 GN=recQ PE=1 SV=5 | 0 | |
| TrEMBL | A0A2E5FUZ4 | DNA helicase OS=Xanthomonadales bacterium OX=2006849 GN=recQ PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology