Basic Information
Locus ID:
jg5079
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 10523694 | 10531858 | + | jg5079 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 86,749.82 Da | 36.75 | 83.50 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 11 | 247 | 2.2576E-62 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 137 | 173 | 1.1E-11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 95 | 131 | 1.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 177 | 215 | 1.0E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 54 | 89 | 5.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 11 | 46 | 0.037 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 631 | 787 | 2.8E-52 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 9 | 296 | 7.63E-71 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 143 | 293 | 1.7E-37 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 142 | 8.6E-34 | IPR015943 |
| SMART | SM00320 | WD40_4 | 50 | 89 | 1.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 7 | 47 | 0.0032 | IPR001680 |
| SMART | SM00320 | WD40_4 | 92 | 131 | 2.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 134 | 173 | 3.2E-13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 256 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 176 | 215 | 1.5E-10 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 99 | 140 | 14.852817 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 99 | 133 | 11.708317 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 141 | 182 | 18.69591 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 57 | 98 | 15.387508 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 141 | 178 | 14.476484 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 14 | 56 | 10.174269 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 57 | 91 | 11.497408 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 183 | 218 | 12.209223 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 183 | 224 | 15.35409 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 202 | 216 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 160 | 174 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 202 | 216 | 3.2E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 160 | 174 | 3.2E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 118 | 132 | 3.2E-8 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 3 | 790 | 20.595476 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 614 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 619 | - | - |
| Coils | Coil | Coil | 463 | 483 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_011070501.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X2 [Sesamum indicum] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9STG2 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Sesamum indicum OX=4182 GN=LOC105156145 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology