Basic Information
Locus ID:
jg4982
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 8884115 | 8885454 | - | jg4982 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 16,621.69 Da | 46.41 | 100.27 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 17 | 79 | 1.13252E-12 | IPR002048 |
| CDD | cd00051 | EFh | 93 | 122 | 4.56643E-7 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 17 | 78 | 3.0E-16 | IPR002048 |
| Pfam | PF13405 | EF-hand domain | 94 | 119 | 2.5E-7 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 6 | 123 | 6.73E-33 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 88 | 125 | 4.8E-10 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 2 | 85 | 1.7E-22 | - |
| SMART | SM00054 | efh_1 | 93 | 121 | 3.2E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 53 | 81 | 0.06 | IPR002048 |
| SMART | SM00054 | efh_1 | 17 | 45 | 4.4E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 49 | 84 | 10.691735 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 13 | 48 | 14.931837 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 89 | 124 | 15.238686 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 102 | 114 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 62 | 74 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 26 | 38 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03000.1 | EF hand calcium-binding protein family. Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner | 0 |
| RefSeq | XP_011070324.1 | probable calcium-binding protein CML11 [Sesamum indicum] | 0 |
| Q9M8U1 | Probable calcium-binding protein CML18 OS=Arabidopsis thaliana OX=3702 GN=CML18 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SLJ5 | probable calcium-binding protein CML11 OS=Sesamum indicum OX=4182 GN=LOC105156009 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology