Basic Information
Locus ID:
jg4953
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 7894987 | 7897420 | - | jg4953 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 73,832.57 Da | 42.44 | 71.25 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 444 | 520 | 5.24382E-48 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 451 | 496 | 1.4E-10 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 93 | 235 | 1.1E-33 | IPR025610 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 450 | 517 | 2.09E-18 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 440 | 513 | 9.3E-17 | IPR036638 |
| SMART | SM00353 | finulus | 453 | 502 | 1.4E-16 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 447 | 496 | 17.389959 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 457 | - | - |
| Coils | Coil | Coil | 493 | 520 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32640.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue lightmediated photomorphogenic growth and blue and far-red-lightregulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. | 0 |
| RefSeq | XP_011082365.1 | transcription factor MYC4-like [Sesamum indicum] | 0 |
| A0A3Q7HRZ6 | Transcription factor MYC2 OS=Solanum lycopersicum OX=4081 GN=MYC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TCP0 | transcription factor MYC4-like OS=Sesamum indicum OX=4182 GN=LOC105165158 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology